Adsorption of terbium ion on Fc/dymethylacrylamide: application of Monte Carlo simulation
Norma Aurea Rangel Vázquez
Abstract
Keywords
References
1 Zielhuis, S. W., Nijsen, J. F., Seppenwoolde, J. H., Zonnenberg, B. A., Bakker, C. J., Hennink, W. E., Van Rijk, P. P., & Van Het Schip, A. D. (2005). Lanthanide, bearing microparticulate systems for multi-modality imaging and targeted therapy of cancer.
2 Carac, A. (2017). Biological and biomedical applications of the lanthanides compounds: a mini review.
3 Teo, R. D., Termini, J., & Gray, H. B. (2016). Lanthanides: applications in cancer diagnosis and therapy.
4 Yoon, M. S., Santra, M., & Ahn, K. H. (2015). Preparation of luminescent lanthanide polymers by ring-opening metathesis polymerization.
5 Zhao, Z. P., Zheng, K., Li, H. R., Zeng, C. H., Zhong, S., Ng, S. W., Zheng, Y., & Chen, Y. (2018). Structure variation and luminescence of 3d, 2d and 1d lanthanide coordination polymers with 1,3-adamantanediacetic acid.
6 Lai, X., Gao, G., Watanabe, J., Liu, H., & Shen, H. (2017). Hydrophilic polyelectrolyte multilayers improve the ELISA system: antibody enrichment and blocking free.
7 Silva, C. S. O., Baptista, R. P., Santos, A. M., Martinho, J. M. G., Cabral, J. M. S., & Taipa, M. A. (2006). Adsorption of human IgG on to poly(N-isopropylacrylamide)-based polymer particles.
8 Welch, N. G., Scoble, J. A., Muir, B. W., & Pigram, P. J. (2017). Orientation and characterization of immobilized antibodies for improved immunoassays: review.
9 Shmanai, V. V., Nikolayeva, T. A., Vinokurova, L. G., & Litoshka, A. A. (2001). Oriented antibody immobilization to polystyrene macrocarriers for immunoassay modified with hydrazide derivatives of poly(meth)acrylic acid.
10 De Michele, C., De Los Rios, P., Foffi, G., & Piazza, F. (2016). Simulation and theory of antibody binding to crowded antigen-covered surfaces.
11 Hebditch, M., Curtis, R., & Warwicker, J. (2017). Sequence composition predicts immunoglobulin superfamily members that could share the intrinsically disordered properties of antibody ch1 domains.
12 Janeway, C. A., Travers, P., & Walport, M. J. (2001).
13 Hamilton, R. G. (1987).
14 Saxena, A., & Wu, D. (2016). Advances in therapeutic Fc engineering-modulation of igg-associated effector functions and serum half-life.
15 Gunasekaran, K., Pentony, M., Shen, M., Garrett, L., Forte, C., Woodward, A., Ng, S. B., Born, T., Retter, M., Manchulenko, K., Sweet, H., Foltz, I. N., Wittekind, M., & Yan, W. (2010). Enhacing antibody Fc heterodimer formation through electrostatic steering effects: applications to bispecific molecules and monovalent IgG.
16 Zhao, J., Nussinov, R., Wu, W. J., & Ma, B. (2018). In silico methods in antibody design.
17 Tramontano, A. (2006). The role of molecular modelling in biomedical research.
18 Choe, W., Durgannavar, T. A., & Chung, S. J. (2016). Fc-binding ligands of immunoglobulin g: an overview of high affinity proteins and peptides.
19 Lobner, E., Traxlmayr, M. W., Obinger, C., & Hasenhindl, C. (2016). Engineered IgG1-Fc-one fragment to bind them all.
20 Hou, T., Chen, K., McLaughlin, W. A., Lu, B., & Wang, W. (2006). Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.
21 Winkler, J., Armano, G., Dybowski, J. N., Kuhn, O., Ledda, F., & Heider, D. (2011). Computational design of a DNA- and Fc-binding fusion protein.
22 Yang, C., Gao, X., & Gong, R. (2018). Engineering of Fc fragments with optimized physicochemical properties implying improvement of clinical potentials for Fc-based therapeutics.
23 Castellanos, M. M., Snyder, J. A., Lee, M., Chakravarthy, S., Clark, N. J., Mcauley, A., & Curtis, J. E. (2017). Characterization of monoclonal antibody-protein antigen complexes using small-angle scattering and molecular modeling.
24 Pellegrini, M., & Doniach, S. (1993). Computer simulation of antibody binding specificity.
25 Wiseman, M. E., & Frank, C. W. (2012). Antibody adsorption and orientation on hydrophobic surfaces.
26 Freyhult, E. K., Andersson, K., & Gustafsson, M. G. (2003). Structural modeling extends QSAR analysis of antibody-lysozyme interactions to 3d-qsar.
27 Souza, E. S., Zaramello, L., Kuhnen, C. A., Junkes, B. S., Yunes, R. A., & Heinzen, V. E. F. (2011). Estimating the octanol/water partition coefficient for aliphatic organic compounds using semi-empirical electrotopological index.
28 Bennour, S., & Louzri, F. (2014). Study of swelling properties and thermal behavior of poly(n,n-dimethylacrylamide-co-maleic acid) based hydrogels.
29 Fifere, A., Marangoci, N., Maier, S., Coroaba, A., Maftei, D., & Pinteala, M. (2012). Theoretical study on β-cyclodextrin inclusion complexes with propiconazole and protonated propiconazole.
30 Bivol, V. (2006). Modelling of the 3d-structure of cam:oma photopolymers by using of computational chemistry program.
31 Holstein, P., Harris, R. K., & Say, B. J. (1997). Solid-state 19F NMR investigation of poly(vinylidene fluoride) with high-power proton decoupling.
32 Mazri, R., Belaidi, S., Kerassa, A., & Lanez, T. (2014). Conformational analysis, substituent effect and structure activity relationships of 16-membered macrodiolides.
33 Chen, J., Jiang, X., Carroll, S., Huang, J., & Wang, J. (2015). Theoretical and experimental investigation of thermodynamics and kinetics of thiol-michael addition reactions: a case study of reversible fluorescent probes for glutathione imaging in single cells.
34 Hulubei, C. (2008). Functional maleimide-based structural polymers.
35 Yuan, S., Li, J., Zhu, J., Volodine, A., Li, J., Zhang, G., Van Puyvelde, P., & Van der Bruggen, B. (2018). Hydrophilic nanofiltration membranes with reduced humic acid fouling fabricated from copolymers designed by introducing carboxyl groups in the pendant benzene ring.
36 Marqués-Gallego, P., & De Kroon, A. I. P. M. (2014). Ligation strategies for targeting liposomal nanocarriers.
37 Maeda, K., Finnie, C., & Svensson, B. (2004). Cy5 maleimide labelling for sensitive detection of free thiols in native protein extracts: identification of seed proteins targeted by barley thioredoxin h isoforms.
38 Zimmermann, J. L., Nicolaus, T., Neuert, G., & Blank, K. (2010). Thiol-based, site-specific and covalent immobilization of biomolecules for single-molecule experiments.
39 Han, G., Chen, S. Y., Gonzalez, V. D., Zunder, E. R., Fantl, W. J., & Nolan, G. P. (2017). Atomic mass tag of bismuth-209 for increasing the immunoassay multiplexing capacity of mass cytometry.
40 Chalker, J. M., Bernardes, G. J., Lin, Y. A., & Davis, B. G. (2009). Chemical modification of proteins at cysteine: opportunities in chemistry and biology.
41 Ciborowski, P., & Silberring, J. (2016).
42 Ying, T., Ju, T. W., Wang, Y., Prabakaran, P., & Dimitrov, D. S. (2014). Interactions of IgG1 CH2 and CH3 domains with FcRn.
43 Singh, S. N., Yadav, S., Shire, S. J., & Kalonia, D. S. (2014). Dipole-dipole interaction in antibody solutions: correlation with viscosity behavior at high concentration.
44 Krepper, W., Satzer, P., Beyer, B. M., & Jungbauer, A. (2018). Temperature dependence of antibody adsorption in protein A affinity chromatography.
45 Arquilla, M., Thompson, L. M., Pearlman, L. F., & Simpkins, H. (1983). Effect of platinum antitumor agents on DMA and MA investigated by terbium fluorescence.
46 Vázquez-Ibar, J. L., Weinglass, A. B., & Kaback, H. R. (2002). Engineering a terbium-binding site into an integral membrane protein for luminescence energy transfer.
47 Ravi, S., Krishnamurthy, V. R., Caves, J. M., Haller, C. A., & Chaikof, E. L. (2012). Maleimide-thiol coupling of a bioactive peptide to an elastin-like protein polymer.
48 Nanda, J. S., & Lorsch, J. R. (2014).
49 Bulaj, G., Kortemme, T., & Goldenberg, D. P. (1998). Ionization-reactivity relationships for cysteine thiols in polypeptides.
50 Kogan, S., Zeng, Q., Ash, N., & Greenes, R. A. (2001). Problems and challenges in patient information retrieval: a descriptive study.
51 Ionescu, R. M., Vlasak, J., Price, C., & Kirchmeier, M. (2008). Contribution of variable domains to the stability of humanized IgG1 monoclonal antibodies.
52 Hess, B., & Van der Vegt, N. F. A. (2006). Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models.
53 Ning, L., Zhang, L., Hu, L., Yang, F., Duan, C., & Zhang, Y. (2011). DFT calculations of crystal-field parameters for the lanthanide ions in the LaCl3 crystal.
54 Rzączyńska, Z., Woźniak, M., Wołodkiewicz, W., Ostasz, A., & Pikus, S. (2007). Thermal properties of lanthanide(III) complexes with 5-amino-1,3-benzenedicarboxylic acid.
55 Beck, A., Goetsch, L., Dumontet, C., & Corvaïa, N. (2017). Strategies and challenges for the next generation of antibody-drug conjugates.
56 Kanmert, D. (2011).